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Transactions on Computational Systems Biology III

Transactions on Computational Systems Biology III Author Corrado Priami
ISBN-10 3540308830
Release 2005-12-12
Pages 168
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In the last few decades, advances in molecular biology and in the research - frastructure in this ?eld has given rise to the "omics" revolution in molecular biology, alongwiththeexplosionofdatabases: fromgenomicstotranscriptomics, proteomics, interactomics, and metabolomics. However, the huge amount of b- logicalinformationavailablehasleftabottleneckindataprocessing: information over?ow has called for innovative techniques for their visualization, modelling, interpretationandanalysis.The manyresultsfromthe ?eldsofcomputerscience andengineeringhavethenmetwithbiology, leadingto new, emergingdisciplines such as bioinformatics and systems biology. So, for instance, as the result of - plicationoftechniquessuchasmachinelearning, self-organizingmaps, statistical algorithms, clusteringalgorithmsandmulti-agentsystemstomodernbiology, we can actually model and simulate some functions of the cell (e.g., protein inter- tion, gene expression and gene regulation), make inferences from the molecular biology database, make connections among biological data, and derive useful predictions. Today, and more generally, two di?erent scenarios characterize the po- genomic era. On the one hand, the huge amount of datasets made available by biological research all over the world mandates for suitable techniques, tools and methods meant at modelling biological processes and analyzing biological sequences. On the other hand, biological systems work as the sources of a wide range of new computational models and paradigms, which are now ready to be applied in the context of computer-based systems.



Transactions on Computational Systems Biology X

Transactions on Computational Systems Biology X Author Corrado Priami
ISBN-10 9783540922728
Release 2008-12-18
Pages 197
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This special issue on Biological and Biologically-inspired Communication contains the extended versions of the best papers presented at the Second International Conference on Bio-Inspired Models of Network, Information, and Computing Systems (BIONETICS 2007). The first three papers describe the applicability of bio-inspired techniques in the technical domain of computing and communication. The following two papers focus on molecular communication and the properties of such communication channels. Two further papers demonstrate techniques for the analysis of genes, and these are followed by a paper outlining an evolutionary approach to the non-unique oligonucleotide probe selection problem. The final paper, which is a regular paper, describes a stochastic pi-calculus model of the PHO pathway.



Transactions on Computational Systems Biology VIII

Transactions on Computational Systems Biology VIII Author Corrado Priami
ISBN-10 9783540766391
Release 2007-10-28
Pages 108
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences. It supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. The six papers selected for this special issue cover a broad range of topics.



Transactions on Computational Systems Biology II

Transactions on Computational Systems Biology II Author Corrado Priami
ISBN-10 9783540294016
Release 2005-11-04
Pages 152
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This second volume of the Transactions on Computational Systems Biology is devoted to considerably extended versions of selected papers presented at the International Workshop on Bioinformatics Research and Applications (IWBRA 2005), part of the International Conference on Computational Science (ICCS 2005), which took place at Emory University, Atlanta, Georgia, USA, in May 2005. The ten papers selected for the special issue cover a wide range of bioinformatics research such as problems in RNA structure prediction, coding schemes and structural alphabets for protein structure prediction, novel techniques for efficient gene transfer in phylogenetic networks, practical algorithms minimizing recombinations in pedigree phasing, parallel implementation in Open MP for finding the corresponding shortest edit distance between two signed gene permutations, and bioinformatics problems in DNA microarrays.



Transactions on Computational Systems Biology IV

Transactions on Computational Systems Biology IV Author Luca Cardelli
ISBN-10 9783540332459
Release 2006-04-06
Pages 141
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This, the 4th Transactions on Computational Systems Biology volume, contains carefully selected and enhanced contributions presented at the first Converging Science conference held at the University of Trento, Italy, in December 2004. Dedicated especially to models and metaphors from biology to bioinformatics tools, the 11 papers selected for the special issue cover a wide range of bioinformatics research, such as foundations of global computing, interdisciplinarity in innovation initiatives, convergence of sciences, biodiversity, the concept of e-science, programming languages in systems biology, neuronal cells, bioinspired autonomic computing, digitalization and telecommunications, quantitative modeling of gene networks, and protein/RNA structure prediction.



Transactions on Computational Systems Biology

Transactions on Computational Systems Biology Author
ISBN-10 CORNELL:31924109654255
Release 2008
Pages
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Transactions on Computational Systems Biology has been writing in one form or another for most of life. You can find so many inspiration from Transactions on Computational Systems Biology also informative, and entertaining. Click DOWNLOAD or Read Online button to get full Transactions on Computational Systems Biology book for free.



Transactions on Computational Systems Biology I

Transactions on Computational Systems Biology I Author
ISBN-10 9783540321262
Release 2005-03-10
Pages 112
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Thisisthe?rstissueofanewjournaloftheLNCSjournalsubline.Theaimofthe journal is to encourage inter- and multidisciplinary research in the ?elds of c- puter science and life sciences. The recent paradigmatic shift in biology towards a system view of biological phenomena requires a corresponding paradigmatic shift in the techniques from computer science that can face the new challenges. Classical tools usually used in bioinformatics are no longer up to date and new ideas are needed. The convergence of sciences and technologies we are experiencing these days is changing the classical terms of reference for research activities. In fact clear distinctions between disciplines no longer exist because advances in one ?eld permit advances in others and vice versa, thus establishing a positive feedback loop between sciences. The potential impact of the convergence of sciences and technologies is so huge that we must consider how to control and correctly drive our future activities. International and national funding agencies are looking at interdisciplinary research as a key issue for the coming years, especially in the intersection of life sciences and information technology. To speed up this process, we surely need to establish relationships between researchers of di?erent communities and to de?ne a common language that will allow them to exchange ideas and - sults. Furthermore, expectations of di?erent communities can be merged only by running activities like common projects and experiences. TheTransactionsonComputationalSystemsBiologycouldbeagoodforumto helplifescientistsandcomputerscientiststodiscusstogethertheircommongoals.



Transactions on Computational Systems Biology XI

Transactions on Computational Systems Biology XI Author Corrado Priami
ISBN-10 3642041876
Release 2009-10-22
Pages 335
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This issue on Computational Models for Cell Processes is based on a workshop that took place in Turku, Finland, May 2008. The papers span a mix of approaches to systems biology, ranging from quantitative techniques to computing paradigms inspired by biology.



Mobility in Process Calculi and Natural Computing

Mobility in Process Calculi and Natural Computing Author Bogdan Aman
ISBN-10 9783642248672
Release 2011-11-03
Pages 210
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The design of formal calculi in which fundamental concepts underlying interactive systems can be described and studied has been a central theme of theoretical computer science in recent decades, while membrane computing, a rule-based formalism inspired by biological cells, is a more recent field that belongs to the general area of natural computing. This is the first book to establish a link between these two research directions while treating mobility as the central topic. In the first chapter the authors offer a formal description of mobility in process calculi, noting the entities that move: links (π-calculus), ambients (ambient calculi) and branes (brane calculi). In the second chapter they study mobility in the framework of natural computing. The authors define several systems of mobile membranes in which the movement inside a spatial structure is provided by rules inspired by endocytosis and exocytosis. They study their computational power in comparison with the classical notion of Turing computability and their efficiency in algorithmically solving hard problems in polynomial time. The final chapter deals with encodings, establishing links between process calculi and membrane computing so that researchers can share techniques between these fields. The book is suitable for computer scientists working in concurrency and in biologically inspired formalisms, and also for mathematically inclined scientists interested in formalizing moving agents and biological phenomena. The text is supported with examples and exercises, so it can also be used for courses on these topics.



Transactions on Computational Systems Biology XII

Transactions on Computational Systems Biology XII Author
ISBN-10 9783642117114
Release 2010-02-18
Pages 263
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LNCS 5945



Transactions on Computational Systems Biology XIII

Transactions on Computational Systems Biology XIII Author Ralph-Johan Back
ISBN-10 9783642197482
Release 2011-05-05
Pages 193
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This, the 13th Transactions on Computational Systems Biology volume, guest edited by Ralph-Johan Back, Ion Petre, and Erik de Vink, focuses on Computational Models for Cell Processes and features a number of carefully selected and enhanced contributions initially presented at the CompMod workshop, which took place in Eindhoven, The Netherlands, in November 2009. From different points of view and following various approaches, the papers cover a wide range of topics in systems biology, addressing the dynamics and the computational principles of this emerging field.



Transactions on Computational Systems Biology XIV

Transactions on Computational Systems Biology XIV Author Ion Petre
ISBN-10 9783642355240
Release 2012-11-28
Pages 233
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This, the 14th Transactions on Computational Systems Biology volume, guest edited by Ion Petre and Erik de Vink, focuses on Computational Models for Cell Processes and features a number of carefully selected and enhanced contributions, initially presented at the CompMod workshop, which took place in Aachen, Germany, in September 2011. The papers, written from different points of view and following various approaches, cover a wide range of topics within the field of modeling and analysis of biological systems. In addition, two regular submissions deal with models of self-assembling systems and metabolic constraints on the evolution of genetic codes.



Transactions on Computational Systems Biology VII

Transactions on Computational Systems Biology VII Author Corrado Priami
ISBN-10 9783540488378
Release 2006-11-13
Pages 184
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This volume, the 7th in the Transactions on Computational Systems Biology series, contains a fully-refereed and carefully selected set of papers from the two workshops BioConcur 2004 held in London, UK in August 2004 and BioConcur 2005 held in San Francisco, CA, USA in August 2005. The 8 papers selected for this special issue are devoted to various aspects of computational methods, algorithms and techniques in bioinformatics such as modeling of signalling pathways, gene regulation in pi-calculus, relations between regulator graphs and Petri nets, translation of SBML models to stochastic pi-calculus, use of graph theory to model biological networks, distributed model checking with biochemical Kripke structures, graphical notation for stochastic pi-calculus, as well as differentiation and homeostatic behavior of boolean dynamic systems.



Transactions on Computational Systems Biology IX

Transactions on Computational Systems Biology IX Author Corrado Priami
ISBN-10 9783540887645
Release 2008-10-23
Pages 153
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The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This issue contains four highly detailed papers. The first paper focuses on quantitative aspects of the bgl operon for E.coli. The second contribution deals with ecosystem transitions affecting phenotype expressions and selection mechanisms. The third paper presents the Stochastic Calculus of Looping Sequences (SCLS) suitable for the description of microbiological systems, such as cellular pathways, and their evolution. The final contribution describes the use of biological transactions to make atomic sequences of interactions in the BlenX language.



The British National Bibliography

The British National Bibliography Author Arthur James Wells
ISBN-10 UOM:39015066099238
Release 2006
Pages
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The British National Bibliography has been writing in one form or another for most of life. You can find so many inspiration from The British National Bibliography also informative, and entertaining. Click DOWNLOAD or Read Online button to get full The British National Bibliography book for free.



A Computational Approach to Understand Epithelial Morphogenesis and Regeneration

A Computational Approach to Understand Epithelial Morphogenesis and Regeneration Author Hyunjin Kim
ISBN-10 UCAL:C3518908
Release 2009
Pages 350
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A Computational Approach to Understand Epithelial Morphogenesis and Regeneration has been writing in one form or another for most of life. You can find so many inspiration from A Computational Approach to Understand Epithelial Morphogenesis and Regeneration also informative, and entertaining. Click DOWNLOAD or Read Online button to get full A Computational Approach to Understand Epithelial Morphogenesis and Regeneration book for free.



Mathematical Reviews

Mathematical Reviews Author
ISBN-10 UOM:39015078588632
Release 2008
Pages
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Mathematical Reviews has been writing in one form or another for most of life. You can find so many inspiration from Mathematical Reviews also informative, and entertaining. Click DOWNLOAD or Read Online button to get full Mathematical Reviews book for free.